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blastclust

Name blastclust
Description

blastclust is part of the BLAST software package from the NCBI.

blasclust automatically and systematically clusters protein or DNA sequences based on pairwise matches found using the BLAST algorithm in case of proteins or Mega BLAST algorithm for DNA.
Homepage http://www.ncbi.nlm.nih.gov/BLAST/  
Remote Documentation http://www.ncbi.nlm.nih.gov/Education/BLASTinfo/info
 
Local Documentation
blastclust.html